StratomeX – Integrative Visualization for Tumor Subtype Characterization
Project Page | A tool for integrative visualization of cancer genomics data from The Cancer Genome Atlas project to identify and characterize tumor subtypes.
Website | GitHub | The Refinery Platform is a web-based data visualization and analysis system powered by an ISA-Tab-compatible data repository for public and private data sets. Analyses are implemented as Galaxy workflows and executed through the Galaxy API.
Nozzle – Interactive Reports for High-Throughput Data Analysis Pipelines
REX – Retrieval of Experiments
Project Page | Probabilistic retrieval and visualization of biologically relevant microarray experiments from large collections of gene expression studies.
AEX – ArrayExpress Explorer
Project Page | An ontology-guided visual exploration tool for the ArrayExpress Archive built around a tree map visualization of a biomedical ontology.
Project Page | A glyph-based visualization method for very large gene expression data sets that cover hundreds or thousands of samples.
Website | Prequips is a modular software platform for integration, visualization and analysis of complex LC/MS-MS proteomics data sets. The software provides access to data produced by proteomics analysis pipelines and bridges the gap to high-level analysis tools used in systems biology.
Prion Disease Database
Project Page | Website | The Prion Disease Database (PDDB) is a public database that supports the prion disease research community by collecting, integrating, and presenting data from public sources and collaborating laboratories.
Website | Mayday is a workbench for interactive visualization, analysis and storage of microarray data. It supports the development and integration of existing and novel analysis methods through a plugin interface.
Project Page | A visualization method that allows integration of microarray data and meta information to guide the investigator during data exploration and analysis.